3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13538

Details:

PFam ID : PF13538

PFam Domain Description : Family description

Number of Sequence in 50% Dataset : 369

Number of Sequence in Full Dataset : 2104

Average sequence length: 110.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13538	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13538	C0WFZ1_9CORY_261_411	100

Sequence based PCA Plot of the family - PF13538 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=112 Length=8
Motif3 Start=33 Length=11
Motif4 Start=161 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay