3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13537

Details:

PFam ID : PF13537

PFam Domain Description : Glutamine amidotransferase domain

Number of Sequence in 50% Dataset : 221

Number of Sequence in Full Dataset : 2069

Average sequence length: 120.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13537	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13537	D9PMF6_9ZZZZ_81_240	100

Sequence based PCA Plot of the family - PF13537 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=71 Length=8
Motif2 Start=4 Length=11
Motif3 Start=34 Length=8
Motif4 Start=52 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay