3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13536

Details:

PFam ID : PF13536

PFam Domain Description : Multidrug resistance efflux transporter

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 530

Average sequence length: 112.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13536	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13536	E0ULD2_CYAP2_51_170	95.8

Sequence based PCA Plot of the family - PF13536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay