3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13535

Details:

PFam ID : PF13535

PFam Domain Description : ATP-grasp domain

Number of Sequence in 50% Dataset : 862

Number of Sequence in Full Dataset : 2179

Average sequence length: 171.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13535	A2SQA4_METLZ_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13535	F1VUN6_9BURK_52_215	100

Sequence based PCA Plot of the family - PF13535 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=162 Length=8
Motif2 Start=1 Length=8
Motif3 Start=79 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay