3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13534

Details:

PFam ID : PF13534

PFam Domain Description : 4Fe-4S dicluster domain

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 1126

Average sequence length: 71.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13534	A2SQA4_METLZ_1_48	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13534	Q64B10_9ARCH_15_95	96.8

Sequence based PCA Plot of the family - PF13534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay