3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13532

Details:

PFam ID : PF13532

PFam Domain Description : 2OG-Fe(II) oxygenase superfamily

Number of Sequence in 50% Dataset : 288

Number of Sequence in Full Dataset : 1412

Average sequence length: 188.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13532	E9CIV0_9EUKA_18_295	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13532	E9CIV0_9EUKA_18_295	100

Sequence based PCA Plot of the family - PF13532 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=193 Length=11
Motif2 Start=206 Length=8
Motif3 Start=117 Length=8
Motif4 Start=226 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay