3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13525

Details:

PFam ID : PF13525

PFam Domain Description : Outer membrane lipoprotein

Number of Sequence in 50% Dataset : 249

Number of Sequence in Full Dataset : 803

Average sequence length: 169.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13525	C6YV76_9GAMM_34_256	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13525	C6YV76_9GAMM_34_256	100

Sequence based PCA Plot of the family - PF13525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay