3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13524

Details:

PFam ID : PF13524

PFam Domain Description : Glycosyl transferases group 1

Number of Sequence in 50% Dataset : 269

Number of Sequence in Full Dataset : 680

Average sequence length: 97.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13524	B7G3T3_PHATC_104_246	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13524	A2BXU2_PROM5_44_165	99.8

Sequence based PCA Plot of the family - PF13524 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=68 Length=8
Motif3 Start=59 Length=8
Motif4 Start=16 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay