3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13522

Details:

PFam ID : PF13522

PFam Domain Description : Glutamine amidotransferase domain

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 2287

Average sequence length: 148.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13522	B7G3T3_PHATC_104_246	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13522	A7HMW6_FERNB_53_198	99.9

Sequence based PCA Plot of the family - PF13522 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=8
Motif2 Start=34 Length=8
Motif3 Start=46 Length=8
Motif4 Start=17 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay