3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13521

Details:

PFam ID : PF13521

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 491

Average sequence length: 164.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13521	A3K6W1_9RHOB_5_84	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13521	F2UY09_ACTVI_7_194	100

Sequence based PCA Plot of the family - PF13521 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=28 Length=8
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay