3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13520

Details:

PFam ID : PF13520

PFam Domain Description : Amino acid permease

Number of Sequence in 50% Dataset : 1217

Number of Sequence in Full Dataset : 6165

Average sequence length: 411.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13520	Q5YCW2_LACPL_1_211	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13520	D3AY92_POLPA_111_388	99.9

Sequence based PCA Plot of the family - PF13520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=62 Length=8
Motif4 Start=46 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay