3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13519

Details:

PFam ID : PF13519

PFam Domain Description : von Willebrand factor type A domain

Number of Sequence in 50% Dataset : 1832

Number of Sequence in Full Dataset : 4711

Average sequence length: 195.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13519	D8SDB3_SELML_260_500	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13519	E3BK74_9VIBR_141_211	96.9

Sequence based PCA Plot of the family - PF13519 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=35 Length=8
Motif3 Start=109 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay