3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13518

Details:

PFam ID : PF13518

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 457

Number of Sequence in Full Dataset : 1387

Average sequence length: 50.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13518	A0P1K3_9RHOB_66_169	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13518	B1YK22_EXIS2_10_61	99.2

Sequence based PCA Plot of the family - PF13518 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay