3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13517

Details:

PFam ID : PF13517

PFam Domain Description : Family description

Number of Sequence in 50% Dataset : 1180

Number of Sequence in Full Dataset : 4859

Average sequence length: 65.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13517	A0P1K3_9RHOB_66_169	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13517	C0BMW6_9BACT_576_689	100

Sequence based PCA Plot of the family - PF13517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=74 Length=11
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay