3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13516 Details: PFam ID : PF13516 PFam Domain Description : Leucine Rich repeat Number of Sequence in 50% Dataset : 4377 Number of Sequence in Full Dataset : 13960 Average sequence length: 25.1 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13516C6HYC7_9BACT_45_136No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13516C6N031_9GAMM_347_37021 Sequence based PCA Plot of the family - PF13516 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=19 Length=8Motif2 Start=10 Length=8Motif3 Start=1 Length=8Motif4 Start=39 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF13516
PFam Domain Description : Leucine Rich repeat
Number of Sequence in 50% Dataset : 4377
Number of Sequence in Full Dataset : 13960
Average sequence length: 25.1
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER