3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13515

Details:

PFam ID : PF13515

PFam Domain Description : Fusaric acid resistance protein-like

Number of Sequence in 50% Dataset : 346

Number of Sequence in Full Dataset : 1101

Average sequence length: 132.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13515	C6HYC7_9BACT_45_136	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13515	B5YMB2_THAPS_379_516	99.7

Sequence based PCA Plot of the family - PF13515 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=71 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay