3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13514

Details:

PFam ID : PF13514

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 351

Number of Sequence in Full Dataset : 559

Average sequence length: 433.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13514	C6HYC7_9BACT_45_136	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13514	E0Y2D5_9PROT_44_95	100

Sequence based PCA Plot of the family - PF13514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay