3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13511

Details:

PFam ID : PF13511

PFam Domain Description : Domain of unknown function (DUF4124)

Number of Sequence in 50% Dataset : 388

Number of Sequence in Full Dataset : 684

Average sequence length: 82.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13511	F0XEV4_9PEZI_1_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13511	E6V824_VARPD_10_68	100

Sequence based PCA Plot of the family - PF13511 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay