3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13510

Details:

PFam ID : PF13510

PFam Domain Description : BFD-like [2Fe-2S] binding domain

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 1846

Average sequence length: 80.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13510	F0XEV4_9PEZI_1_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13510	C5L4I1_9ALVE_49_125	94.7

Sequence based PCA Plot of the family - PF13510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=1 Length=11
Motif3 Start=28 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay