3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13508

Details:

PFam ID : PF13508

PFam Domain Description : Acetyltransferase (GNAT) domain

Number of Sequence in 50% Dataset : 1234

Number of Sequence in Full Dataset : 4193

Average sequence length: 86.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13508	F0XEV4_9PEZI_1_54	99.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13508	B8PMS1_POSPM_220_315	99.9

Sequence based PCA Plot of the family - PF13508 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=18
Motif2 Start=44 Length=8
Motif3 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay