3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13507

Details:

PFam ID : PF13507

PFam Domain Description : CobB/CobQ-like glutamine amidotransferase domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 1274

Average sequence length: 234.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13507	A2WBE0_9BURK_158_274	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13507	Q2Q0E5_9ZZZZ_4_273	100

Sequence based PCA Plot of the family - PF13507 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=8
Motif2 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay