3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13506

Details:

PFam ID : PF13506

PFam Domain Description : Glycosyl transferase family 21

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 266

Average sequence length: 167.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13506	A2WBE0_9BURK_158_274	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13506	C6LTW0_GIAIB_130_315	100

Sequence based PCA Plot of the family - PF13506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay