3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13505

Details:

PFam ID : PF13505

PFam Domain Description : Outer membrane protein beta-barrel domain

Number of Sequence in 50% Dataset : 1520

Number of Sequence in Full Dataset : 2974

Average sequence length: 200.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13505	Q3KBS1_PSEPF_1_84	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13505	E6W096_DESIS_7_175	92.4

Sequence based PCA Plot of the family - PF13505 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay