3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13504

Details:

PFam ID : PF13504

PFam Domain Description : Leucine rich repeat

Number of Sequence in 50% Dataset : 1250

Number of Sequence in Full Dataset : 1396

Average sequence length: 18.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13504	Q3KBS1_PSEPF_1_84	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13504	E9Z117_ECOLX_84_100	28

Sequence based PCA Plot of the family - PF13504 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay