3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13500

Details:

PFam ID : PF13500

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 279

Number of Sequence in Full Dataset : 1495

Average sequence length: 203.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13500	A4N9D1_HAEIF_2_90	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13500	D7FP85_ECTSI_1_140	99.9

Sequence based PCA Plot of the family - PF13500 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=14
Motif2 Start=2 Length=23
Motif3 Start=100 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay