3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13499

Details:

PFam ID : PF13499

PFam Domain Description : EF-hand domain pair

Number of Sequence in 50% Dataset : 1660

Number of Sequence in Full Dataset : 6940

Average sequence length: 70.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13499	C3Y0D8_BRAFL_40_213	99.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13499	Q5C2C3_SCHJA_78_202	99.7

Sequence based PCA Plot of the family - PF13499 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay