3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13496

Details:

PFam ID : PF13496

PFam Domain Description : Domain of unknown function (DUF4120)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 13

Average sequence length: 83.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13496	B6VX79_9BACE_2_52	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13496	E4MEE4_9BACT_2_96	100

Sequence based PCA Plot of the family - PF13496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=73 Length=8
Motif4 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay