3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13491

Details:

PFam ID : PF13491

PFam Domain Description : Domain of unknown function (DUF4117)

Number of Sequence in 50% Dataset : 353

Number of Sequence in Full Dataset : 897

Average sequence length: 160.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13491	A3DJ02_CLOTH_3_38	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13491	E0QXN8_ECOLX_19_79	100

Sequence based PCA Plot of the family - PF13491 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=8
Motif3 Start=98 Length=8
Motif4 Start=80 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay