3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13489

Details:

PFam ID : PF13489

PFam Domain Description : Methyltransferase domain

Number of Sequence in 50% Dataset : 2552

Number of Sequence in Full Dataset : 6925

Average sequence length: 173.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13489	D5UFP0_CELFN_216_478	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13489	E1XZ31_LEGPN_115_324	99.9

Sequence based PCA Plot of the family - PF13489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=16 Length=8
Motif3 Start=1 Length=8
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay