3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13488

Details:

PFam ID : PF13488

PFam Domain Description : Glycine zipper

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 449

Average sequence length: 47.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13488	A3ETS0_9BACT_18_43	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13488	F0P206_WEEVC_55_87	91.9

Sequence based PCA Plot of the family - PF13488 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay