3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13487

Details:

PFam ID : PF13487

PFam Domain Description : HD domain

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 1572

Average sequence length: 63.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13487	A3ETS0_9BACT_18_43	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13487	Q2BNH3_9GAMM_246_310	100

Sequence based PCA Plot of the family - PF13487 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay