3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13484

Details:

PFam ID : PF13484

PFam Domain Description : 4Fe-4S dicluster domain

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 852

Average sequence length: 65.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13484	A4QX82_MAGO7_12_125	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13484	D1JH36_9ARCH_227_323	99.1

Sequence based PCA Plot of the family - PF13484 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=88 Length=8
Motif2 Start=6 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay