3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13483

Details:

PFam ID : PF13483

PFam Domain Description : Beta-lactamase superfamily domain

Number of Sequence in 50% Dataset : 190

Number of Sequence in Full Dataset : 1007

Average sequence length: 181.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13483	A4QX82_MAGO7_12_125	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13483	B1B8A9_CLOBO_5_55	100

Sequence based PCA Plot of the family - PF13483 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=1 Length=11
Motif3 Start=176 Length=14
Motif4 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay