3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13481

Details:

PFam ID : PF13481

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 472

Number of Sequence in Full Dataset : 1945

Average sequence length: 169.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13481	Q4L3T4_STAHJ_25_255	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13481	B6XXI4_9BIFI_7_91	100

Sequence based PCA Plot of the family - PF13481 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=147 Length=8
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay