3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13480

Details:

PFam ID : PF13480

PFam Domain Description : Acetyltransferase (GNAT) domain

Number of Sequence in 50% Dataset : 470

Number of Sequence in Full Dataset : 882

Average sequence length: 141.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13480	Q4L3T4_STAHJ_25_255	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13480	C8W4F6_DESAS_133_307	99.8

Sequence based PCA Plot of the family - PF13480 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=167 Length=8
Motif3 Start=35 Length=8
Motif4 Start=149 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay