3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13479

Details:

PFam ID : PF13479

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 225

Average sequence length: 220.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13479	Q4L3T4_STAHJ_25_255	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13479	Q855Z7_9CAUD_13_285	100

Sequence based PCA Plot of the family - PF13479 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=189 Length=8
Motif2 Start=73 Length=8
Motif3 Start=9 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay