3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13478

Details:

PFam ID : PF13478

PFam Domain Description : XdhC Rossmann domain

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 922

Average sequence length: 139.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13478	Q1QBN0_PSYCK_141_321	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13478	Q1QBN0_PSYCK_141_321	100

Sequence based PCA Plot of the family - PF13478 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=11
Motif2 Start=1 Length=8
Motif3 Start=157 Length=25

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay