3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13477

Details:

PFam ID : PF13477

PFam Domain Description : Glycosyl transferase 4-like

Number of Sequence in 50% Dataset : 491

Number of Sequence in Full Dataset : 887

Average sequence length: 140.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13477	A4X988_SALTO_10_89	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13477	F2G6E4_ALTMD_18_133	99.5

Sequence based PCA Plot of the family - PF13477 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay