3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13476

Details:

PFam ID : PF13476

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 1365

Number of Sequence in Full Dataset : 2739

Average sequence length: 279.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13476	A4X988_SALTO_10_89	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13476	A6GJH6_9DELT_283_370	99.8

Sequence based PCA Plot of the family - PF13476 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay