3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13475

Details:

PFam ID : PF13475

PFam Domain Description : Domain of unknown function (DUF4116)

Number of Sequence in 50% Dataset : 505

Number of Sequence in Full Dataset : 1438

Average sequence length: 48.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13475	A4X988_SALTO_10_89	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13475	D2VST1_NAEGR_539_610	99.3

Sequence based PCA Plot of the family - PF13475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=29 Length=8
Motif3 Start=47 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay