3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13472

Details:

PFam ID : PF13472

PFam Domain Description : GDSL-like Lipase/Acylhydrolase family

Number of Sequence in 50% Dataset : 1835

Number of Sequence in Full Dataset : 4963

Average sequence length: 191.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13472	A4FLS6_SACEN_1_66	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13472	F0GJ23_9BURK_227_318	98.9

Sequence based PCA Plot of the family - PF13472 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=4 Length=8
Motif3 Start=160 Length=8
Motif4 Start=455 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay