3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13471

Details:

PFam ID : PF13471

PFam Domain Description : Transglutaminase-like superfamily

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 160

Average sequence length: 112.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13471	A4FLS6_SACEN_1_66	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13471	Q1Q342_9BACT_30_157	100

Sequence based PCA Plot of the family - PF13471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay