3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13465

Details:

PFam ID : PF13465

PFam Domain Description : Zinc-finger double domain

Number of Sequence in 50% Dataset : 261

Number of Sequence in Full Dataset : 32838

Average sequence length: 25.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13465	Q1N5V3_9GAMM_115_276	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13465	C3Z3I0_BRAFL_203_252	92.0

Sequence based PCA Plot of the family - PF13465 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay