3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13463

Details:

PFam ID : PF13463

PFam Domain Description : Winged helix DNA-binding domain

Number of Sequence in 50% Dataset : 357

Number of Sequence in Full Dataset : 707

Average sequence length: 65.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13463	Q1N5V3_9GAMM_115_276	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13463	E3IXY4_FRASU_29_95	98.5

Sequence based PCA Plot of the family - PF13463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay