3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13462

Details:

PFam ID : PF13462

PFam Domain Description : Thioredoxin

Number of Sequence in 50% Dataset : 502

Number of Sequence in Full Dataset : 1602

Average sequence length: 166.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13462	Q1N5V3_9GAMM_115_276	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13462	D1ZX54_SORMK_50_78	100

Sequence based PCA Plot of the family - PF13462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=18 Length=20
Motif3 Start=180 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay