3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13459

Details:

PFam ID : PF13459

PFam Domain Description : 4Fe-4S double cluster binding domain

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 735

Average sequence length: 60.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13459	B9TQ90_RICCO_18_67	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13459	B3V6E2_9EURY_6_78	100

Sequence based PCA Plot of the family - PF13459 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=44 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay