3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13454

Details:

PFam ID : PF13454

PFam Domain Description : FAD-NAD(P)-binding

Number of Sequence in 50% Dataset : 189

Number of Sequence in Full Dataset : 458

Average sequence length: 152.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13454	D7BY25_STRBB_19_209	94.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13454	D7BY25_STRBB_19_209	100

Sequence based PCA Plot of the family - PF13454 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=111 Length=8
Motif3 Start=183 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay