3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13453

Details:

PFam ID : PF13453

PFam Domain Description : Transcription factor zinc-finger

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 287

Average sequence length: 41.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13453	A6GB38_9DELT_13_50	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13453	A6GB38_9DELT_68_111	100

Sequence based PCA Plot of the family - PF13453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay