3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13452

Details:

PFam ID : PF13452

PFam Domain Description : Metal-binding domain of MaoC dehydratase

Number of Sequence in 50% Dataset : 178

Number of Sequence in Full Dataset : 999

Average sequence length: 127.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13452	A3TZG3_9RHOB_8_119	41.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13452	A3TZG3_9RHOB_8_119	100

Sequence based PCA Plot of the family - PF13452 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=104 Length=8
Motif3 Start=1 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay