3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13446

Details:

PFam ID : PF13446

PFam Domain Description : A repeated domain in UCH-protein

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 147

Average sequence length: 60.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13446	C5DJE9_LACTC_418_472	45

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13446	Q7S587_NEUCR_290_351	100

Sequence based PCA Plot of the family - PF13446 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=49 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay